Genomic characterization of porcine RVH detected in Brazil
DOI:
https://doi.org/10.34188/bjaerv8n1-091Palavras-chave:
Rotavirus, RVH, porcine, genotypingResumo
Background: Rotavirus aspergastroenteritidis (also called Rotavirus H; RVH) has been detected in humans, pigs, and bats, and is considered an emerging pathogen; consequently, information regarding its genome, epidemiology and evolution is needed. Methods: RVH strains described in this study were detected in stool samples from post-weaning asymptomatic piglets in the state of Rio de Janeiro, Brazil. RVH genomic segments were amplified by RT-PCR using specific primers and the amplicons were sequenced. Results: Phylogenetic analysis classified both (BP92 and BP260) strains as I3 genotype. The BP92 strain was further identified as genotypes G4-I3-A6-N1-E4-H3. However, some gene sequences showed either percentages of identity below the suggested cut-off value for the identified genotype or showed similarity above the cut-off values established for different genotypes. Conclusion: The Brazilian BP92 strain may have a genomic constellation distinct from those of previously described porcine RVH strains.
Referências
Johne, R., Schilling-Loeffler, K., Ulrich, R. G., Tausch, S. H. (2022). Whole Genome Sequence Analysis of a prototype strain of the novel putative rotavirus species L. Viruses, 14:462. https://doi.org/10.3390/v14030462.
Desselberger, U. (2014). Rotaviruses. Virus Research, 190:75-96. https://doi.org/10.1016/j.virusres.2014.06.016
Matthijnssens, J., Ciarlet, M., McDonald, S. M., Attoui, H., Bányai, K., Brister, J. R., Buesa, J., Esona, M. D., Estes, M. K., Gentsch, J. R., Iturriza-Gómara, M., Johne, R., Kirkwood, C. D., Martella, V., Mertens, P. P., Nakagomi, O., Parreño, V., Rahman, M., Ruggeri, F. M., Saif, L. J., Santos, N., Steyer, A., Taniguchi, K., Patton, J. T., Desselberger, U., Van Ranst, M. (2011). Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Archives of Virology, 156:1397-1413. https://doi.org/10.1007/s00705-011-1006-z.
Ghosh, S., Kobayashi, N. (2011). Whole-genomic analysis of rotavirus strains: current status and future prospects. Future Microbiology, 6:1049-65. https://doi.org/10.2217/fmb.11.90
Ghosh, S., Kobayashi, N. (2014). Exotic rotaviruses in animals and rotaviruses in exotic animals. Virusdisease, 25:158-172. https://doi.org/10.1007/s13337-014-0194-z.
Phan, M. V. T., Anh, P. H., Cuong, N. V., Munnink, B. B. O., van der Hoek, L., My, P. T., Tri, T. N., Bryant, J. E., Baker, S., Thwaites, G., Woolhouse, M., Kellam, P., Rabaa, M. A., Cotton, M., VIZIONS Consortium. (2016). Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection. Virus Evolution, 2:vew027. https://doi.org/10.1093/ve/vew027
Yang, H., Makeyev, E. V., Kang, Z., Ji, S., Bamford, D. H., van Dijk, A. A. (2004). Cloning and sequence analysis of dsRNA segments 5, 6 and 7 of a novel non-group A, B, C adult rotavirus that caused an outbreak of gastroenteritis in China. Virus Research, 106:15-26. https://doi.org/10.1016/j.virusres.2004.05.011
Alam, M. M., Kobayashi, N., Ishino, M., Ahmed, M. S., Ahmed, M. U., Paul, S. K., Muzumdar, B. K., Hussain, Z., Wang, Y. H., Naik, T. N. (2007). Genetic analysis of an ADRV-N-like novel rotavirus strain B219 detected in a sporadic case of adult diarrhea in Bangladesh. Archives of Virology, 152:199-208. https://doi.org/10.1007/s00705-006-0831-y
Jiang, S., Ji, S., Tang, Q., Cui, X., Yang, H., Kan, B., Gao, S. (2008), Molecular characterization of a novel adult diarrhoea rotavirus strain J19 isolated in China and its significance for the evolution and origin of group B rotaviruses. Journal of General Virology, 89:2622-2629. https://doi.org/10.1099/vir.0.2008/001933-0
Wakuda, M., Ide, T., Sasaki, J., Komoto, S., Ishii, J., Sanekata, T., Taniguchi, K. (2011), Porcine rotavirus closely related to novel group of human rotaviruses. Emerging Infectious Diseases, 17:1491-1493. https://doi.org/10.3201/eid1708.101466
Marthaler, D., Rossow, K., Culhane, M., Goyal, S., Collins, J., Matthijnssens, J., Nelson, M., Ciarlet, M. (2014). Widespread rotavirus H in commercially raised pigs, United States. Emerging Infectious Diseases, 20:1195-1198. https://doi.org/10.3201/eid2007.140034
Molinari, B. L., Lorenzetti, E., Otonel, R. A., Alfieri, A. F., Alfieri, A. A. (2014). Species H rotavirus detected in piglets with diarrhea, Brazil, 2012. Emerging Infectious Diseases, 20:1019-22. https://doi.org/10.3201/eid2006.130776.
Puente, H., Cortey, M., de Nova, P. J. G., Mencía-Ares, Ó., Gómez-García, M., Díaz, I., Arguello, H., Martín, M., Rubio, P., Carvajal, A. (2021). First identification and characterization of rotavirus H in swine in Spain. Transboundary and Emerging Diseases, 6:3055-69. https://doi.org/10.1111/tbed.13992
Ferrari, E., Salogni, C., Martella, V., Alborali, G. L., Scaburri, A., Boniotti, M. B. (2022). Assessing the epidemiology of rotavirus A, B, C and H in diarrheic pigs of different ages in northern Italy. Pathogens, 11:467. https://doi.org/10.3390/pathogens11040467
Yinda, C. K., Ghogomu, S. M., Conceição-Neto, N., Beller, L., Deboutte, W., Vanhulle, E., Maes, P., van Ranst, M., Matthijnssens, J. (2018). Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. Virus Evolution, 4:vey008. https://doi.org/10.1093/ve/vey008
Hardmeier, I., Aeberhard, N., Qi, W., Schoenbaechler, K., Kraettli, H., Hatt, J. M., Fraefel, C., Kubacki, J. (2021). Metagenomic analysis of fecal and tissue samples from 18 endemic bat species in Switzerland revealed a diverse virus composition including potentially zoonotic viruses. PLoS One, 16:e0252534. https://doi.org/10.1371/journal.pone.0252534
Kia, G. S. N., Tao, Y., Umoh, J. U., Kwaga, J. K. P., Tong, S. (2021). Identification of coronaviruses, paramyxoviruses, reoviruses, and rotaviruses among bats in Nigeria. American Journal of Tropical Medicine and Hygiene, 104:1106-10. https://doi.org/10.4269/ajtmh.19-0872
Nyaga, M. M., Peenze, I., Potgieter, C. A., Seheri, L. M., Page, N. A., Yinda, C. K., Steele, A. D., Matthijnssens, J., Mphahlele, M. J. (2016). Complete genome analyses of the first porcine rotavirus group H identified from a South African pig does not provide evidence for recent interspecies transmission events. Infection, Genetics and Evolution, 38:1-7. https://doi.org/10.1016/j.meegid.2015.11.032
Suzuki, T., Inoue, D. (2018). Full genome-based genotyping system for rotavirus H and detection of potential gene recombination in nonstructural protein 3 between porcine rotavirus H and rotavirus C. Journal of General Virology, 99:1582-9. https://doi.org/10.1099/jgv.0.001162
Flores, P. S., Costa, F. B., Amorim, A. R., Mendes, G. S., Rojas, M., Santos, N. (2021). Rotavirus A, C, and H in Brazilian pigs: potential for zoonotic transmission of RVA. Journal of Veterinary Diagnostic Investigation, 33:129-35. https://doi.org/10.1177/1040638720967673
Matthijnssens, J., Ciarlet, M., Rahman, M., Attoui, H., Bányai, K., Estes, M. K., Gentsch, J. R., Iturriza-Gómara, M., Kirkwood, C. D., Martella, V., Mertens, P. P., Nakagomi, O., Patton, J. T., Ruggeri, F. M., Saif, L. J., Santos, N., Steyer, A., Taniguchi, K., Desselberger, U., van Ranst, M. (2008). Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Archives of Virology, 153:1621-1629. https://doi.org/10.1007/s00705-008-0155-1
Trovão, N. S., Shepherd, F. K., Herzberg, K., Jarvis, M. C., Lam, H. C., Rovira, A., Culhane, M. R., Nelson, M. I., Marthaler, D. G. (2019). Evolution of rotavirus C in humans and several domestic animal species. Zoonoses Public Health, 66:546-557. https://doi.org/10.1111/zph.12575.
Costa, F. B., Flores, P. S., Amorim, A. R., Mendes, G. D. S., Santos, N. (2020). Porcine rotavirus C strains carrying human-like NSP4 and NSP5. Zoonoses Public Health, 67:849-861. https://doi.org/10.1111/zph.12713.
Downloads
Publicado
Como Citar
Edição
Seção
Licença
- O conteúdo dos artigos é de responsabilidade exclusiva dos autores.
- É permitida a reprodução total ou parcial do conteúdo dos artigos, desde que citada a fonte.
- Artigos com plágio serão recusados, e o autor do plágio perderá o direito de publicar nesta revista.
- Os nomes e endereços informados nesta revista serão utilizados exclusivamente para os serviços prestados por esta publicação e não estão disponíveis para outros fins ou a terceiros.
- Depois de enviar os artigos, os autores cedem os direitos autorais de seus artigos ao BJAER. Se você se arrepender da submissão, o autor tem o direito de solicitar ao BJAER que não publique seu artigo. Porém, essa solicitação deve ocorrer até dois meses antes da divulgação do número que o artigo será publicado.
- O BJAER usa a licença Creative Commons CC BY. Informações sobre esta licença podem ser encontradas em: https://creativecommons.org/licenses/by/3.0/br/
Brazilian Journal of Animal and Environmental Research (BJAER) se reserva o direito de efetuar nos originais alterações de ordem normativa, ortográfica e gramatical, com vistas a manter o padrão culto da língua, respeitando, porém, o estilo dos autores. Os trabalhos finais não serão enviadas aos autores.
